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surject realigns a large portion of the read instead of splitting into supplementaries

Status: Open.

#4959 In vgteam/vg;

· faithokamoto opened on Jul 7, 2026

vg snarls incorrectly reports ultrabubbles in cyclic bidirected graph

Status: Open.

#4957 In vgteam/vg;

· Shreeharsha-BE21B037 opened on Jul 6, 2026

Get vg Debian package up to date

Status: Open.

#4952 In vgteam/vg;

· adamnovak opened on Jul 1, 2026

something problem about mpmap and rpvg

Status: Open.

#4944 In vgteam/vg;

· caesarbulu opened on Jun 26, 2026

vg surject cannot produce properly-paired BAM for STITCH genotyping — is this fundamentally infeasible by design?

Status: Open.

#4935 In vgteam/vg;

· isaamael opened on Jun 16, 2026

Release vg v1.76.0

Status: Open.

#4933 In vgteam/vg;

· faithokamoto opened on Jun 15, 2026

·  

v1.76.0

vg giraffe is slow when mapping reads and doesn't utilize multithreading for GAM output

Status: Open.

#4931 In vgteam/vg;

· jikhashkya opened on Jun 12, 2026

Add a way to control where the explanation directories go from the command line

Status: Open.

#4925 In vgteam/vg;

· adamnovak opened on Jun 9, 2026

People want to add tags to SAM read groups, and think they can be included in --read-group, but they can't

Status: Open.

#4924 In vgteam/vg;

· adamnovak opened on Jun 9, 2026

Unexpected memory growth and empty output when mapping short RNA-seq reads to a pantranscriptome using mpmap

Status: Open.

#4919 In vgteam/vg;

· mt1022 opened on Jun 2, 2026

Is it possible to reduce/minimize haplotype/path switching in vg giraffe mappings?

Status: Open.

#4917 In vgteam/vg;

· Sorcery229 opened on May 28, 2026

vg giraffe will take bad tail alignments that probably should've been softclipped

Status: Open.

#4905 In vgteam/vg;

· faithokamoto opened on May 13, 2026