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Pull requests: nextstrain/ncov

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Pull requests list

Remove stale emerging_lineage, immune_escape, and ace2_binding colorings
#1213 opened Jun 27, 2026 by trvrb Member Loading…
2 tasks
Remove the historical 21L (BA.2-rooted) GISAID build variant
#1211 opened Jun 27, 2026 by trvrb Member Loading…
1 task
Remove proximity subsampling
#1210 opened Jun 27, 2026 by trvrb Member Loading…
1 task
Remove orphan rules find_clusters and extract_meta
#1209 opened Jun 27, 2026 by trvrb Member Loading…
1 task
Remove confirmed-dead scripts, defaults, and config keys
#1208 opened Jun 27, 2026 by trvrb Member Loading…
1 task
Color Pango lineages corresponding to clade coloring
#1207 opened Jun 27, 2026 by trvrb Member Loading…
3 tasks done
1
Designate clade 26B (XFG.3.4.1)
#1206 opened Jun 26, 2026 by trvrb Member Loading…
1
Add propose_clades.py tooling to find clade designation candidates
#1205 opened Jun 23, 2026 by trvrb Member Loading…
4 tasks done
5
Remove Nextstrain profiles
#1197 opened Mar 24, 2026 by victorlin Member Loading…
@victorlin
feat: use nightly nextclade tree
#1170 opened Jan 28, 2025 by ivan-aksamentov Member Loading…
2 of 6 tasks
3
Add a map of Nextstrain clade to Pango lineage
#1159 opened Oct 23, 2024 by huddlej Contributor Loading…
4 tasks
3
Demo prefilter rule for Nextstrain GISAID build
#1128 opened Jul 25, 2024 by huddlej Contributor Loading…
4 tasks
8
inline root sequence
#1111 opened May 30, 2024 by rneher Member Loading…
Document example accepted docker image formats for action
#1105 opened May 3, 2024 by victorlin Member Loading…
1
@victorlin
Update Suffolk lat/long
#1100 opened Feb 27, 2024 by joverlee521 Contributor Loading…
Introduce minimum augur version check
#1070 opened May 16, 2023 by jameshadfield Member Loading…
3
Allow specification of container image in workflow rebuild-100k.yml
#1067 opened May 5, 2023 by corneliusroemer Member Loading…
2
Allow a list of sequence exclusion files, instead of just one
#977 opened Jul 11, 2022 by sacundim Loading…
1
Memory resource definitions
#953 opened May 25, 2022 by tsibley Contributor Loading…
3 tasks
1
2
Fix annotate metadata with numeric strains
#952 opened May 25, 2022 by huddlej Contributor Loading…
2 tasks done
1
@huddlej
6
Remove whitespace indents from large Auspice JSONs
#944 opened May 9, 2022 by fanninpm Contributor Loading…
4 tasks
4
Fill in more lat/long data from the OpenStreetMap name-to-location API
#920 opened Apr 15, 2022 by jgadling Contributor Loading…
2
Add parameter to enable overriding tree args
#871 opened Feb 16, 2022 by huddlej Contributor Loading…
4 of 5 tasks
4
Remove redundant include strains bug Something isn't working
#843 opened Jan 25, 2022 by huddlej Contributor Loading…
2 tasks done
@huddlej
2
#657 Validate input files from config file
#821 opened Dec 15, 2021 by emontag47 Loading…
4 tasks
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