Outgroup rooting the phylogenetic trees#59
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Mopeia virus is another Old World arenavirus. Picked Mopeia after glancing through paper https://pmc.ncbi.nlm.nih.gov/articles/PMC112216/ Picked the RefSeq entries for Mopeia from NCBI Virus https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide&VirusLineage_ss=Mammarenavirus%20mopeiaense,%20taxid:3052320&SourceDB_s=RefSeq
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Description of proposed changes
This adds Mopeia virus as an outgroup to root the trees.
Opening this as a draft to ease discussion of consistency in rooting, treetime inference of ancestral amino acid changes, and Nextclade result placement.
Staged outgrouped trees against the live trees
To view the alignments and intermediate files, download artifact from
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