https in docs, clarify installation instructions, delete rst

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build_wheels on: push 7

linux (ubuntu-22.04, x86_64)

linux (ubuntu-22.04, aarch64)

musllinux (ubuntu-22.04, x86_64)

musllinux (ubuntu-22.04, aarch64)

macos (macos-latest, x86_64)

macos (macos-latest, aarch64)

sdist

Release

tests_docs on: push

Build Sphinx documentation

tests_rust on: push

run cargo test

tests_pytest on: push

Check deeptools/galaxy/Rust versions stay in sync

Test on Linux (py312)

Test on Linux (py313)

Test on Linux (py314)

Test on OSX (py312)

Test on OSX (py313)

Test on OSX (py314)

tests_planemo on: push 20

Planemo test (alignmentSieve)

Planemo test (bamCompare)

Planemo test (bamCoverage)

Planemo test (bamPEFragmentSize)

Planemo test (bigwigCompare)

Planemo test (bigwigAverage)

Planemo test (computeGCBias)

Planemo test (computeMatrix)

Planemo test (computeMatrixOperations)

Planemo test (correctGCBias)

Planemo test (estimateReadFiltering)

Planemo test (multiBamSummary)

Planemo test (multiBigwigSummary)

Planemo test (plotCorrelation)

Planemo test (plotCoverage)

Planemo test (plotEnrichment)

Planemo test (plotFingerprint)

Planemo test (plotHeatmap)

Planemo test (plotPCA)

Planemo test (plotProfiler)

tests_planemo on: pull_request 1