⚡ Bolt: [performance improvement] optimize dataframe iteration - #116
⚡ Bolt: [performance improvement] optimize dataframe iteration#116alinelena wants to merge 1 commit into
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Replaces the slow `df.iterrows()` with `df.to_dict('records')` in `verify_processed_omol25.py`. The `iterrows()` method creates a new Series object for every row, which causes major overhead in large datasets. Converting the entire DataFrame to a list of dicts first is significantly faster and more memory efficient for these lookups.
Co-authored-by: alinelena <3306823+alinelena@users.noreply.github.com>
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💡 What: Replaced
df.iterrows()withdf.to_dict('records')when processing Parquet records inverify_processed_omol25.py.🎯 Why:
iterrows()is an anti-pattern in pandas for large datasets because it incurs huge overhead by creating a newpd.Seriesobject for every single row. Converting the DataFrame to a list of native Python dictionaries pushes the iteration into optimized C code and returns lightweight dicts, which are perfectly suited for building theparquet_by_shaandparquet_by_argone_rellookup tables.📊 Impact: Significantly faster script execution time for verification of large datasets, bypassing the heavy pandas Series construction loop.
🔬 Measurement: Running the verification script on large Parquet and ExtXYZ files will show a drastically reduced "Loading Parquet file..." phase compared to the original code.
PR created automatically by Jules for task 14907987310001069741 started by @alinelena