Hello Here are some analyses we should try. Within Glomeromycota, are there differences between cropping systems? How many sequences are only classified as fungi?

Collaborations with EBach

This includes scripts for depth samples, ITS samples, and co-occurrence applications THIS IS A CHANGE

Name		Name	Last commit message	Last commit date
AMFcol_Figs.R		AMFcol_Figs.R
AMFcol_analyses.R		AMFcol_analyses.R
COBS_ITS_Ascomycota.R		COBS_ITS_Ascomycota.R
COBS_ITS_Basidiomycota.R		COBS_ITS_Basidiomycota.R
COBS_ITS_ComMetadataAnalysis.R		COBS_ITS_ComMetadataAnalysis.R
COBS_ITS_CropDatePairwise.R		COBS_ITS_CropDatePairwise.R
COBS_ITS_CropTaxaPointrange.R		COBS_ITS_CropTaxaPointrange.R
COBS_ITS_DraftNMDSfig.R		COBS_ITS_DraftNMDSfig.R
COBS_ITS_EnvAnalyses.R		COBS_ITS_EnvAnalyses.R
COBS_ITS_EnvWS.R		COBS_ITS_EnvWS.R
COBS_ITS_GlomExploration.R		COBS_ITS_GlomExploration.R
COBS_ITS_GlomZygoChytri.R		COBS_ITS_GlomZygoChytri.R
COBS_ITS_PhylAnalyses.R		COBS_ITS_PhylAnalyses.R
COBS_ITS_PhylaSubset.R		COBS_ITS_PhylaSubset.R
COBS_ITS_PhylaTotalsStacked.R		COBS_ITS_PhylaTotalsStacked.R
COBS_ITS_SoilFracTaxaPointrange.R		COBS_ITS_SoilFracTaxaPointrange.R
COBS_ITS_SpeciesCentroids.R		COBS_ITS_SpeciesCentroids.R
COBS_ITS_TargetTaxaAnalysis.R		COBS_ITS_TargetTaxaAnalysis.R
COBS_ITS_TargetTaxaNMDS.R		COBS_ITS_TargetTaxaNMDS.R
COBS_ITS_TaxaAbundance.R		COBS_ITS_TaxaAbundance.R
COBS_ITS_TaxaEnzyVisuals.R		COBS_ITS_TaxaEnzyVisuals.R
COBS_ITS_WSpropStats.R		COBS_ITS_WSpropStats.R
README.md		README.md
data_wrangling.R		data_wrangling.R
diversity_stats.R		diversity_stats.R
ideas.md		ideas.md
mixed_model_regressions_cobs_aggexample_Bach.R		mixed_model_regressions_cobs_aggexample_Bach.R
multivariate_tests.R		multivariate_tests.R
new_mixed_model.R		new_mixed_model.R