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macOS: skip set_readwrite_recursive walk after clonefile (~1.85x materialization speedup)#2349

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May 21, 2026
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macOS: skip set_readwrite_recursive walk after clonefile (~1.85x materialization speedup)#2349
MarcusSorealheis merged 5 commits into
TraceMachina:mainfrom
erneestoc:ec/macos-skip-chmod-walk

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@erneestoc

@erneestoc erneestoc commented May 19, 2026

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Description

Follow-up to #2338 (now merged). The macOS clonefile(2) fast path is followed by a recursive set_readwrite_recursive chmod walk that makes every file in the cloned tree writable. On real Bazel SwiftCompile shapes (~2000 inputs / ~466 MB) that walk accounts for ~46% of materialization time — ~33 µs per file, ~67 ms per action.

This PR replaces the walk with a single chmod(2) on the destination root (new helper chmod_dir_writable). Existing entries inside the clone inherit the source's read-only mode (0o555 dirs, 0o444 files). The worker can still create the action's declared output files because the root itself is 0o755.

Why this is correct (and not a regression)

Leaving inputs read-only is what Bazel itself does:

  • linux-sandbox bind-mounts inputs read-only — kernel rejects writes regardless of file mode.
  • darwin-sandbox / sandbox-exec denies writes outside declared output paths via Seatbelt.
  • REAPI Action.output_files / Action.output_directories are the only paths an action may write to.

Workers without sandbox primitives (NativeLink, bazel-remote, BuildBuddy, Buildfarm) substitute file mode for kernel enforcement: 0o444 files / 0o555 dirs is the hermeticity enforcement. The previous chmod walk weakened that — making inputs writable to "be nice" to misbehaved actions. Skipping the walk brings NativeLink in line with the REAPI contract and with what Bazel's own sandboxes do.

An action that tries to mutate an input now hits EACCES, which is the correct REAPI behavior — same failure mode as on Bazel's own sandbox. The new test test_clonefile_input_mutation_fails encodes this contract.

Bench evidence

From nativelink-util/benches/chmod_strategy.rs (on ec/macos-clonefile-optimizations-benchmarks, Apple M4 Max / APFS):

shape walk (current main) toplevel_only (this PR) speedup
small_flat (64 files, 64 KB) 4.66 ms 2.61 ms 1.79×
pcm_cluster (219 files, 40 MB) 15.17 ms 8.19 ms 1.85×
medium_flat (635 files, 180 MB) 46.36 ms 25.10 ms 1.85×
large_flat (1978 files, 466 MB) 147.39 ms 80.17 ms 1.84×

Walk fraction is ~46% across shapes regardless of file size — confirming the cost is per-file syscall, not per-byte.

Scope

  • macOS-only. Linux/Windows fall straight through to hardlink_directory_tree_recursive and never ran set_readwrite_recursive in this code path.
  • set_readwrite_recursive stays public — still called by nativelink-worker/src/directory_cache.rs:451 on the source side during eviction. (Note: PR directory_cache: fix CAS inode corruption from chmod-during-eviction #2347 replaces that remaining caller with a directories-only variant; after both PRs land, set_readwrite_recursive would be dead code and can be removed in a follow-up.)
  • No worker-side write wrapper, no audit phase. Trusting the REAPI hermeticity contract — if a future audit discovers worker-internal writes that hit EACCES inside the cloned tree, that's a bug to fix at the write site, not paper over by mutating input perms.

Note on backward compatibility

Not a breaking change in the semver sense. However, actions that previously mutated their own input files (a hermeticity violation) will now hit EACCES. This matches how Bazel's own sandboxes already behave, so any action that breaks here was also broken under linux-sandbox / darwin-sandbox — operators can detect such actions by the new error mode.

Type of change

  • Bug fix (non-breaking change which fixes an issue — hermeticity contract violation + perf)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to not work as expected)
  • This change requires a documentation update

How Has This Been Tested?

  • cargo test -p nativelink-util --lib fs_util:: — 9/9 pass on macOS arm64 (3 new + 6 existing)
  • cargo test -p nativelink-worker --lib directory_cache:: — 2/2 pass
  • cargo build -p nativelink-util -p nativelink-worker clean
  • cargo clippy -p nativelink-util --lib --tests -- -D warnings clean
  • cargo fmt --check clean
  • Disallowed-methods grep against clippy.toml — no matches in diff

New tests:

  • test_clonefile_root_writable_inputs_readonly — root is 0o755, subdirs stay 0o555, files stay 0o444 (replaces test_clonefile_dest_is_writable which assumed subdirs would be made writable by the walk).
  • test_clonefile_root_accepts_new_files — worker can create output files at the root even though everything inside the clone is read-only.
  • test_clonefile_input_mutation_fails — writes to existing input files fail with PermissionDenied — encodes the hermeticity contract.

Checklist

  • Updated documentation if needed (in-code doc comments updated; no public API change)
  • Tests added/amended
  • bazel test //... passes locally (verified via cargo only)
  • PR is contained in a single commit

This change is Reviewable

@palfrey

palfrey commented May 20, 2026

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/build-image nativelink-worker-init

@palfrey

palfrey commented May 20, 2026

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/build-image

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Image built and pushed!

ghcr.io/TraceMachina/nativelink:de74f3c

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Image built and pushed!

ghcr.io/TraceMachina/nativelink-worker-init:de74f3c

@palfrey

palfrey commented May 20, 2026

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Image built and pushed!

ghcr.io/TraceMachina/nativelink:de74f3c

Given that this is a follow-up to an earlier PR and that the major category of problem here is a slowdown on Macs (and I don't have one to hand), is it possible for you to run a test with the newly listed images here to check this does actually resolve the problem in real-world testing v.s. just the CI tests?

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LGTM

erneestoc and others added 3 commits May 20, 2026 23:02
The macOS clonefile fast path was followed by a recursive chmod walk that
made every file in the cloned tree writable (0o644 / 0o755). On real
Bazel input shapes (~2000-file SwiftCompile) that walk accounted for
~46% of materialization time — ~33 µs per file, ~67 ms per action.

Replace the walk with a single chmod(2) on the destination root.
Existing entries inherit the source's read-only mode (0o555 dirs,
0o444 files). The worker can still create the action's declared output
files inside the root because the root itself is 0o755.

This matches the hermeticity contract enforced by Bazel's local
sandbox (linux-sandbox bind-mounts inputs read-only;
darwin-sandbox / sandbox-exec denies writes outside declared output
paths) and the REAPI Action.output_files / output_directories
semantics: actions write only to declared outputs, never mutate
inputs. An action that does try to mutate an input now hits EACCES,
which is the correct REAPI behavior — same failure mode as on
Bazel's own sandbox.

Bench (nativelink-util/benches/chmod_strategy.rs on the bench branch),
toplevel_only vs full walk:

  shape                         walk      toplevel_only   speedup
  small_flat   (64 files)       4.66 ms   2.61 ms         1.79x
  pcm_cluster  (219 files)     15.17 ms   8.19 ms         1.85x
  medium_flat  (635 files)     46.36 ms  25.10 ms         1.85x
  large_flat   (1978 files)   147.39 ms  80.17 ms         1.84x

set_readwrite_recursive stays public — directory_cache.rs:451 still
uses it on the source side during eviction.

Tests:
- test_clonefile_root_writable_inputs_readonly: root 0o755, subdirs
  0o555, files 0o444 (replaces the old test_clonefile_dest_is_writable
  which assumed subdirs would be made writable).
- test_clonefile_root_accepts_new_files: worker can create outputs at
  the root even though everything inside the clone is read-only.
- test_clonefile_input_mutation_fails: writes to existing input files
  fail with PermissionDenied — encodes the hermeticity contract.
…2347 cleanup

After TraceMachina#2347 (DirectoryCache cleanup uses set_dir_writable_recursive)
and this PR (post-clonefile path uses chmod_dir_writable), the
generic set_readwrite_recursive helper has zero remaining callers.
Both replacements are intentionally narrower - set_dir_writable_recursive
chmods only directories so file inodes aren't mutated, and
chmod_dir_writable chmods only the destination root so the clone
tree stays read-only inside. Delete the old helper and its private
companion set_readwrite_one_path.

Addresses palfrey's review feedback on TraceMachina#2347 ("set_readwrite_recursive
and set_readwrite_one_path can be dropped as part of this") - sequenced
on this PR instead because both PRs had to land before the helpers
became dead.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
PR TraceMachina#2338's clonefile fast path is effectively dead in production — it
materialized 1 of 1771 actions in a real build. Three coupled bugs kept
the directory cache silently falling back to the slow download path, and
two of them only surface once the fast path actually fires, so they must
land together.

Bug 1: prepare_action_inputs received a work directory the caller had
already created, but hardlink_directory_tree and clonefile(2) both
require the destination to NOT exist. Every cache attempt failed its
precondition and fell back to download_to_directory. Fix: remove the
empty pre-created directory before invoking the cache, and recreate it
on cache failure so the download fallback (which needs an existing
destination) still works. Adds fs::remove_dir for the empty-dir removal.

Bug 2: set_readonly_recursive chmod'd files to 0o444, stripping the
execute bit from cached executables. Once a tree is cloned into a
workspace this makes an action's interpreter/wrapper script fail with
EACCES. Fix: mark files 0o555 instead of 0o444 — read + execute, still
no write bit, so the hermeticity contract is unchanged.

Bug 3: the clonefile path chmods only the destination root writable;
cloned subdirectories keep the source's 0o555 mode. Bazel actions
declare outputs at paths nested inside input subdirectories, and
creating those files needs write permission on the parent directory.
Fix: after a cache hit, set_dir_writable_recursive makes every directory
in the materialized tree writable. Files stay read-only — they may be
CAS-hardlinked and chmoding them would corrupt the shared inode.

Adds regression tests for nested output creation, which the existing
root-only clonefile tests did not cover.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
@erneestoc erneestoc force-pushed the ec/macos-skip-chmod-walk branch from 7d5e88e to ff3fede Compare May 21, 2026 07:07
@erneestoc

erneestoc commented May 21, 2026

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@palfrey tested. Thanks for requesting, I found a few issues. There was a Directory cache failed, falling back to traditional download error, only first clonefile went through, and the rest falling back.

Good news is they're fixed and tested on a big app and actually seeing some performance improvements on my local setup (using tart macOS VM for the worker, dockerized scheduler 31% improvement compared to 1.2.0 release on a big modular iOS app "fetch" part of each action).

The original change (skip the set_readwrite_recursive walk) is correct, but it optimizes a path production almost never reaches — and it was only safe because
that path was dead (see Bug 3).

3 coupled bugs (fixed)

  • Bug 1 — the fast path never fires. The worker pre-creates the action's work/ directory before materializing inputs, but hardlink_directory_tree and clonefile(2)
    both require the destination to not exist. Every cache attempt failed its precondition and fell back to the slow download_to_directory path. Fix:
    prepare_action_inputs removes the empty pre-created directory before invoking the cache, and recreates it on cache failure so the download fallback still works.
  • Bug 2 — the execute bit gets stripped. set_readonly_recursive chmod'd files to 0o444, dropping +x from cached executables. Once a tree is cloned into a
    workspace, an action whose interpreter/wrapper script lost its exec bit fails with EACCES. Latent only because Bug 1 kept the directory-cache path dead. Fix:
    mark files 0o555 instead of 0o444 — read + execute, still no write bit, so the hermeticity contract is unchanged.
  • Bug 3 — nested outputs can't be created. This PR's original change chmods only the destination root to 0o755; cloned subdirectories keep the source's 0o555 mode.
    But Bazel actions declare outputs at paths nested inside input subdirectories (e.g. bazel-out/.../bin/foo.entitlements), and creating those needs write
    permission on the parent directory. The original tests only covered creating files at the root, so the PR passed CI while shipping this gap. Fix: after a cache
    hit, set_dir_writable_recursive makes every directory in the materialized tree writable; files stay read-only (they may be CAS-hardlinked — chmoding them would
    corrupt the shared inode, see directory_cache: fix CAS inode corruption from chmod-during-eviction #2347).

@MarcusSorealheis MarcusSorealheis enabled auto-merge (squash) May 21, 2026 17:09
@MarcusSorealheis MarcusSorealheis merged commit 6b17b68 into TraceMachina:main May 21, 2026
31 checks passed
@erneestoc erneestoc deleted the ec/macos-skip-chmod-walk branch May 22, 2026 03:37
MarcusSorealheis added a commit that referenced this pull request May 25, 2026
* util: make permission walks symlink-safe

The recursive permission walk `set_perms_recursive_impl` (driving both
`set_readonly_recursive` and `set_dir_writable_recursive`) used
`fs::metadata` (stat), which follows symlinks. On input trees containing
symlinks - e.g. `.venv/bin/python3` produced by rules_python /
rules_apple venv tooling - this had two failure modes:

  * A symlink to a directory reported `is_dir() == true`, so the walk
    recursed *through* the link, escaping the materialized tree or
    descending into an unrelated directory.
  * A symlink was passed to `set_permissions`; `chmod` follows symlinks,
    so it mutated the link's target. When the target did not exist (a
    dangling link - common when a venv points outside the action's
    input set) the `chmod` returned ENOENT and failed the entire walk.

That ENOENT failure surfaced as `set_readonly_recursive` erroring inside
`DirectoryCache::get_or_create`, which made `prepare_action_inputs` log
"Directory cache failed, falling back to traditional download" and take
the slow `download_to_directory` path.

Fix: `set_perms_recursive_impl` now uses `symlink_metadata` (lstat) and
returns early on symlink entries - it never chmods a symlink and never
recurses through one. Regular files keep their existing read-only
(0o555) treatment, so the CAS-hardlinked-inode hermeticity contract
(PR #2347) is unchanged.

`hardlink_directory_tree_recursive` already recreated symlinks as
symlinks; its symlink branch is reordered ahead of the `is_dir()` /
`is_file()` branches to make the symlink-first intent explicit and
robust.

Adds regression tests covering set-readonly, set-dir-writable, and
hardlink/clone walks over a tree containing a symlink to an in-tree
file, a dangling relative symlink, and a symlink to an in-tree
directory, asserting each walk succeeds and the symlinks are preserved
with their targets intact.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* worker: make directory-cache entries already-writable

`DirectoryCache` locks each cache entry down with `set_readonly_recursive`
after construction. Previously that helper made the entire entry tree mode
0o555 — directories included — so every materialization had to follow up
with a separate `set_dir_writable_recursive` recursive chmod walk in
`prepare_action_inputs` to re-add write permission to directories (Bazel
actions declare outputs at paths nested inside input subdirectories).

That post-walk is redundant work. Directories are not hardlink-shared
between cache entries — only file content inodes are — so directory mode
can safely be made writable once, at the cache entry, instead of on every
materialization.

`set_readonly_recursive` now locks a tree down as a cache entry by making
only FILES read-only (0o555) and leaving DIRECTORIES writable (0o755).
Both materialization paths then produce a directly-usable tree:

- macOS `clonefile(2)` copies the source's modes verbatim, so the clone's
  directories are writable and its files read-only.
- The Linux per-file hardlink walk creates fresh directories (writable)
  and hardlinks files (which keep the source inode's read-only mode).

Files stay read-only on both paths, so the hermeticity contract and the
CAS-hardlink shared-inode invariant (PR #2347) are preserved. With the
materialized tree already correct, the `set_dir_writable_recursive` call
is removed from `prepare_action_inputs`. `set_dir_writable_recursive`
itself is unchanged and still used by the cache eviction cleanup path.

Tests:
- fs_util: `test_set_readonly_recursive` now also asserts directories stay
  writable; the macOS clonefile tests assert cloned subdirs are writable
  and that a nested output can be created with no `set_dir_writable_recursive`
  walk; `test_set_dir_writable_recursive_walks_nested_dirs` keeps covering
  the eviction-cleanup helper.
- directory_cache: new `test_materialized_tree_dirs_writable_files_readonly`
  builds a nested tree and asserts that, after `get_or_create` on both the
  fresh-materialize and cache-hit paths, every directory is writable and
  every file is read-only, with no separate chmod walk.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* worker: hardlink CAS blobs in directory-cache construct

`DirectoryCache::construct_directory` previously materialized every file by
fetching the whole blob into RAM (`get_part_unchunked`) and writing a full
copy (`fs::write`). For a cache that exists to avoid re-fetching from the
CAS, this is the dominant cost on a miss.

Switch the cache-entry file build to hardlink the FilesystemStore CAS blob
directly into the cache entry — zero-copy, metadata-only — exactly the way
`download_to_directory` already does on the fallback path:
`populate_fast_store` then `get_file_entry_for_digest` /
`get_file_path_locked` / `fs::hard_link`.

Correctness:
  * A hardlinked CAS blob shares its inode with the CAS store and every
    other action that hardlinked the same blob, so it must never be
    chmod'd (the inode-corruption bug PR #2347 fixed). Executable files
    (`FileNode.is_executable`) therefore get their own private inode via
    fetch+write and are chmod'd 0o555 on that unshared copy — never
    hardlinked.
  * When the blob is not locally hardlinkable (the fast tier is not a
    FilesystemStore, or the blob is absent / evicted from it), the file
    falls back to fetch+write rather than failing the build.
  * Zero-byte files keep their existing direct-write special case.
  * The post-construction lockdown switches from `set_readonly_recursive`
    (which chmods files, and would corrupt the shared CAS inode) to
    `set_dir_writable_recursive`, which only touches directories.

`DirectoryCache::new` now takes the worker's `Arc<FastSlowStore>` so it can
reach `populate_fast_store` and downcast the fast tier to FilesystemStore.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* worker: drop the two redundant full-tree walks in directory-cache build

After `construct_directory`, the cache-miss path walked the materialized
tree twice more: `calculate_directory_size` (an `fs::metadata` per file)
to compute the LRU size, and a recursive permission pass to normalize
directory modes. Both are now folded into construction itself.

Size: `construct_directory` returns the total tree size, accumulated from
`FileNode.digest.size_bytes` in the `Directory` protos it already decodes.
This is also more correct than the old filesystem walk — it counts each
file once by its CAS size and never follows symlinks into possibly-shared
or external targets. Symlinks contribute nothing.

Directory mode: each cache-entry directory is chmod'd 0o755 the moment it
is created (`create_dir_writable`), umask-independent. The directory is
writable while it is populated and that is its stable final mode, so the
separate post-construction `set_dir_writable_recursive` walk is gone.

Cache-entry files are still never chmod'd here — they may be CAS-blob
hardlinks (OPT #1) and mutating their mode would corrupt the shared inode.

Reconciliation with PR #2357: that PR reworks `set_readonly_recursive` so
the recursive walk leaves dirs 0o755 / files 0o555. This commit removes
the directory-cache build's dependence on any such recursive walk
entirely — modes are set at creation. Whichever lands second, the rebase
is a straight delete of the now-unused call site; there is no semantic
conflict because both converge on 0o755 directories, and #2357's file
handling is irrelevant here since the cache build no longer touches file
modes at all.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* worker: narrow the directory-cache lock and single-flight construction

The cache write lock was held across syscall-heavy I/O, serializing every
concurrent `get_or_create`:

  * On the cache-hit paths, `cache.write()` was held across the whole
    `hardlink_directory_tree` (clonefile / per-file hardlink) materialization.
  * `evict_lru` ran `set_dir_writable_recursive` + `remove_dir_all` on the
    evicted tree under the write lock during a cache miss.

Lock narrowing:
  * `acquire_entry` / `release_entry` take the write lock only to bump and
    drop a `ref_count` pin and snapshot the entry path; the
    `hardlink_directory_tree` materialization runs fully unlocked. The pin is
    what makes this safe — `evict_lru` never selects an entry with
    `ref_count > 0`, so the cache tree cannot be deleted mid-hardlink. The
    newly constructed entry is likewise inserted pre-pinned (`ref_count: 1`)
    and unpinned only after its destination hardlink completes; otherwise a
    concurrent miss for an unrelated digest could evict the brand-new entry
    (its `last_access` is recent but it is the only unpinned one) while this
    caller is still hardlinking from it.
  * `evict_if_needed` / `evict_lru` are now pure in-memory: they select
    victims and remove them from the map under the lock, returning the
    victim paths. `dispatch_evictions` then performs the chmod + removal on
    a `background_spawn` task, off the lock.

Single-flight: the existing per-digest construction mutex already ensures a
digest is constructed once while N callers wait; this commit additionally
unmaps the per-digest mutex (`forget_construction_lock`) once construction
finishes so `construction_locks` no longer grows unbounded over the worker's
lifetime. Unmapping is race-free: a waiter has already cloned the `Arc<Mutex>`
before blocking, and a late arrival that creates a fresh mutex still re-checks
the cache, finds the entry, and takes the fast hardlink path — never a
redundant construct.

`ref_count` / `CachedDirectoryMetadata` semantics are unchanged; the
hit/miss return contract is unchanged.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* address merge interactions with read-only CAS

* remove inode stat in test

* update dependencies to 1.3.1

* worker: materialize executable inputs by hardlink to a created-once 0o555 variant (fix ETXTBSY)

Materializing an executable input via a per-action `std::fs::copy` opened a
writable fd in the worker's hot prepare path. Under fork-heavy concurrency a
sibling action's forked child could inherit that fd, and a concurrent `execve`
of the executable then failed with `ETXTBSY` ("Text file busy", os error 26) —
seen on Linux RBE (k8) building rules_go's `builder`. macOS was largely shielded
because its directory-cache path uses APFS `clonefile(2)` (a distinct COW inode
per action), but the per-file `download_to_directory` fallback hardlinks on both
platforms, so the regression spanned both.

Fix (keep the hot path hardlink-only — no writable fd):
- nativelink-store: add `FilesystemStore::get_executable_hardlink_source`. The
  CAS blob is read-only 0o444 and shared by hardlink, so it cannot carry +x and
  must never be chmod'd (#2347). This creates a per-digest 0o555 variant exactly
  once (single-flight), copy -> chmod -> fsync -> atomic rename, so the writer fd
  is closed before the inode is ever hardlinked or executed. Stored in a sibling
  `{content_path}.exec` dir (ignored by the content/temp scan + prune) and
  cleared on startup. On APFS the copy is itself a `clonefile`.
- download_to_directory: executables now hardlink that shared 0o555 variant and
  non-executables hardlink the 0o444 CAS blob. A private copy is used only for
  the rare custom unix_mode / mtime case, applied to a private inode.

The macOS `clonefile` materialization (`hardlink_directory_tree`, #2349) and the
directory cache's executable handling are left untouched, preserving the macOS
speedup.

Test: executable_hardlink_source_created_once_and_readonly asserts the variant is
0o555, a separate inode from the 0o444 blob, stable across calls, leaves the blob
untouched, and hardlinks into an executable. nativelink-store 243/0,
nativelink-worker 88/0.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* filesystem_store: use nativelink spawn_blocking! macro (clippy disallowed_methods)

tokio::task::spawn_blocking is banned by clippy.toml in favor of
nativelink-util's spawn_blocking! macro (adds the tracing span +
JoinHandleDropGuard). Fixes the -D clippy::disallowed-methods CI failure on
get_executable_hardlink_source's executable-variant creation.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* filesystem_store: gate executable-variant machinery to unix (fix Windows build)

The executable 0o555 variant (and its single-flight map, variant path, .exec
dir, and spawn_blocking copy) only exists to carry the unix executable bit and
dodge the unix ETXTBSY race. On Windows it was dead code, failing the build
under -D warnings (unused import spawn_blocking, never-read executable_locks,
never-used executable_variant_path). Gate all of it (and the HashMap / Mutex /
EXECUTABLE_DIR_SUFFIX it pulls in) behind #[cfg(unix)]; the existing
#[cfg(not(unix))] get_executable_hardlink_source just hardlinks the CAS blob.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Ernesto Cambuston <e.cambuston@gmail.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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