Issues

• Intermediate SAM file

  RabadanLab/arcasHLA#152 · Filter by author keder opened on May 11, 2026

• --population Prior meaning

  RabadanLab/arcasHLA#151 · Filter by author Geneece opened on Apr 23, 2026

• What is the alignment.p file format?

  RabadanLab/arcasHLA#149 · Filter by author jlac opened on Jul 30, 2025

• Unable to create conda env with strict channel priority

  RabadanLab/arcasHLA#146 · Filter by author jonasfreimuth opened on Jun 12, 2025

• population prior

  RabadanLab/arcasHLA#145 · Filter by author cjieming2 opened on Jun 10, 2025

• [IndexError] invalid index to scalar variable

  RabadanLab/arcasHLA#143 · Filter by author asaksager opened on Jan 20, 2025

• Negative copy number

  RabadanLab/arcasHLA#142 · Filter by author malonzm1 opened on Jan 15, 2025

• Unexpected Explained Reads Calculation

  RabadanLab/arcasHLA#139 · Filter by author ddemelfi opened on Nov 19, 2024

• new version of kallisto outputs have changed

  RabadanLab/arcasHLA#138 · Filter by author katahdin0 opened on Sep 23, 2024

• samtools and kallisto versions not found

  RabadanLab/arcasHLA#137 · Filter by author arusa opened on Aug 23, 2024
  2

• Failure to check exit codes of run_command causes a hang

  RabadanLab/arcasHLA#135 · Filter by author pshaughn opened on Aug 6, 2024

• pseudoalignments.tsv error

  RabadanLab/arcasHLA#134 · Filter by author Bondada20 opened on Jun 16, 2024
  10

• IMGT/HLA version 3.56.0 and onwards provides large files as zip files

  RabadanLab/arcasHLA#133 · Filter by author Carovanandel opened on Apr 26, 2024
  3

• unable to install arcasHLA in M3 Mac under conda.

  RabadanLab/arcasHLA#131 · Filter by author jasoncrucify opened on Apr 17, 2024

• No HLA name file

  RabadanLab/arcasHLA#130 · Filter by author arghdan opened on Apr 14, 2024
  2

• arcasHLA reference error with IMGTHLA>3.34.0

  RabadanLab/arcasHLA#129 · Filter by author Tesson98 opened on Apr 3, 2024

• Giving path to reference dataset in genotype command

  RabadanLab/arcasHLA#127 · Filter by author Carovanandel opened on Mar 21, 2024

• TypeError: only integer scalar arrays can be converted to a scalar index

  RabadanLab/arcasHLA#126 · Filter by author Weiyifan opened on Feb 29, 2024
  4

• Donor/Recipient

  RabadanLab/arcasHLA#124 · Filter by author pwmellors opened on Feb 28, 2024

• 0 reads mapped to a single HLA gene

  RabadanLab/arcasHLA#119 · Filter by author june-zhang-bioinfo opened on Feb 1, 2024

• Problems running customize

  RabadanLab/arcasHLA#117 · Filter by author bozbezbozzel opened on Jan 2, 2024
  4

  

• Some alles alleles did not be inferred ？

  RabadanLab/arcasHLA#115 · Filter by author Portulaca666 opened on Dec 15, 2023
  1

• Frequent reporting of a null allele for 10X data

  RabadanLab/arcasHLA#114 · Filter by author vincentwalter opened on Nov 29, 2023

• arcasHLA customize not working

  RabadanLab/arcasHLA#111 · Filter by author staedlern opened on Sep 20, 2023
  1

• Getting empty fastq files after partial typing

  RabadanLab/arcasHLA#106 · Filter by author mahlaranjeet opened on Jun 12, 2023
  1