fix: Standardize normalize output figures across MOSuite function calls#4
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…cyclicloess (default: quantile)
Use the MOSuite plot color default for normalize-counts and update capsule help text for supplied colors, generated extras, and random fallback behavior.
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phoman14
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kelly-sovacool
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Jul 7, 2026
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please fix the merge conflicts
in the future, make sure you do the following steps before creating a new branch:
git switch main
git pull
git switch -c newbranchname
this will ensure the new branch will have the latest commits from main, and should avoid conflicts like these.
alternatively, you can use the github web interface to create a new branch for the same effect.
kelly-sovacool
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Jul 8, 2026
kelly-sovacool
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#5 will update this branch to manage MOSuite via syncweaver |
Co-authored-by: Kelly Sovacool, PhD <kelly-sovacool@users.noreply.github.com>
* chore: add MOSuite via syncweaver * `air format` (GitHub Actions) --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
kelly-sovacool
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Jul 8, 2026
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Summary
This PR aligns the normalize-counts capsule with the package-level figure standardization work. The intent is for figures produced from this capsule to match figures produced by the corresponding MOSuite function calls, rather than carrying capsule-specific color or legend defaults.
Changes
CCBR/MOSuite@FigOutSyncduring capsule setup so the capsule can use the updated package behavior before the next release image is available.FigOutSyncbranch; this PR does not target or updatemaindirectly.normalize_counts()can use the package's automatic legend text scaling for many or long labels.CHANGELOG.mdfor the user-facing default changes.@phoman14attribution to the development changelog entries for this PR.Validation: local capsule tests passed (
PASS 12).Issues
No linked issue.
PR Checklist
(
Strikethroughany points that are not applicable.)CHANGELOG.mdwith a short description of any user-facing changes and reference the PR number. Follow the style described in https://style.tidyverse.org/news.htmltestsworkflow succeeds on the latest commit.