Add database search to LLM functionality - #2

Merged

JR-1991 merged 14 commits into

Sep 10, 2025

Commits on Sep 10, 2025

Add database search tools for EnzymeML
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b7256d6
Add PDF page selection support to PDFUpload class
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5d0bcb4
Add pdf-lib and p-* libraries, remove dotenv
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04b8496
Export ToolChainEvent type from llm module
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9b4c50d
Add tool chain execution and progress tracking to LLM streaming
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82fa5f1
Add PubChem support to database search tools
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14b698c
Set tool_choice to 'required' in planToolCalls
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98e61a7
Export SearchDatabaseTool from tools module
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b25400f
Remove cleanup method from PDFUpload class
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3a64c82
Make tools parameter configurable in extractData
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a0a0a50
Remove unused imports from llm.ts
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0aec8fe
Refactor tool handling to use ToolDefinition type
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59334b6
Remove unused SearchDatabaseToolSpecs export
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73a1f98
Bump version to 1.5.0 and remove example script
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acbbd92