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Slurm batch system: RuntimeError: Unknown jobID, could not be converted

Status: Open.

#5553 In DataBiosphere/toil;

· CGuichard opened on Jul 10, 2026

src/toil/test/docs/scriptsTest.py::ToilDocumentationTest::testMultiplejobs2 test is flaky because log messages from jobs can be handled out of order

Status: Open.

#5552 In DataBiosphere/toil;

· adamnovak opened on Jul 7, 2026

Replace Slurm Docker for Slurm tests with https://hub.docker.com/r/giovtorres/slurm-docker/

Status: Open.

#5550 In DataBiosphere/toil;

· adamnovak opened on Jul 6, 2026

Document submitting a multi-node job using MPI (MPIRequirement) via Toil

Status: Open.

#5546 In DataBiosphere/toil;

· kinow opened on Jun 28, 2026

Singularity images are duplicated

Status: Open.

#5545 In DataBiosphere/toil;

· CGuichard opened on Jun 25, 2026

FOREIGN KEY constraint failed after a restart from another leader

Status: Open.

#5544 In DataBiosphere/toil;

· OlivierRo opened on Jun 25, 2026

--cwl-min-ram help is confusing: make us add Toil overhead

cwl

intern

Status: Open.

#5535 In DataBiosphere/toil;

· adamnovak opened on Jun 9, 2026

WDL quickstart example in the documentation lacks a version, so it won't work (and isn't under test)

documentation

intern

wdl

Status: Open.

#5534 In DataBiosphere/toil;

· adamnovak opened on Jun 9, 2026

Don't count image pulls towards CWL ToolTimeLimit

cwl

Status: Open.

#5533 In DataBiosphere/toil;

· adamnovak opened on Jun 4, 2026

Make Toil set CWL_SINGULARITY_CACHE if not set for CWL workflows

cwl

intern

Status: Open.

#5532 In DataBiosphere/toil;

· adamnovak opened on Jun 4, 2026

toil-cwl-runner should allow http://commonwl.org/cwltool# namespaced extensions by default

cwl

intern

Status: Open.

#5531 In DataBiosphere/toil;

· adamnovak opened on Jun 3, 2026

Improve MiniWDL WDL 1.2 support

intern

wdl

Status: Open.

#5527 In DataBiosphere/toil;

· unito-bot opened on May 29, 2026