Issues · DataBiosphere/meta-disco · GitHub

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Validate AnVIL metadata records at load: nothing checks the shape of what the API returns

#161

· NoopDog opened

on Jul 10, 2026

The rule engine clobbers ExtendedFileInfo.file_format, so callers must fabricate synthetic filenames

#160

· NoopDog opened

on Jul 10, 2026

Graph extension list is written three times with no drift guard (anchor fixes two; extension_map needs a test)

#159

· NoopDog opened

on Jul 10, 2026

FetchError conflates permanent and transient failures, so retry and a negative cache are impossible

#158

· NoopDog opened

on Jul 10, 2026

Phase 3 catch-all ignores file_format: 671 records get no extension rules (and a junk suffix)

#157

· NoopDog opened

on Jul 10, 2026

Mirror availability report: HEAD every catalog md5 and find files the AnVIL S3 mirror no longer holds

#156

· NoopDog opened

on Jul 10, 2026

Fetchers that fail return None and their records are dropped from the output entirely

#155

· NoopDog opened

on Jul 10, 2026

Design: rules with fact-based antecedents — collapse the six per-format classifiers into extractors + derivers + rules

#154

· NoopDog opened

on Jul 10, 2026

_fetch_range end_byte is inclusive: three fetchers over-fetch by one byte and their comments are wrong

#153

· NoopDog opened

on Jul 9, 2026

BAM/VCF classifiers ignore file_name — filename-scoped rules never see the real name (~8% of BAM under-classified)

#152

· NoopDog opened

on Jul 9, 2026

Claims are unconstructed dicts with a silently-defaulting tier — add ExtendedClassificationResult.add_claim

#150

· NoopDog opened

on Jul 9, 2026

_decompress_if_gzipped truncates BGZF at the first block (multi-member gzip)

#149

· NoopDog opened

on Jul 9, 2026