Issues

• Switch default github container download from nightly to latest.

  CoBrALab/RABIES#511 · Filter by author Gab-D-G opened on Sep 1, 2026
  3

• Implement patch-denoising

  CoBrALab/RABIES#494 · Filter by author Gab-D-G opened on Apr 16, 2026
  6

• [Bug]: Registration issues

  CoBrALab/RABIES#482 · Filter by author elenaki94 opened on Mar 13, 2026
  1

• weird inhomgeneity correction bold errors

  CoBrALab/RABIES#475 · Filter by author mapepe18 opened on Feb 10, 2026
  3

• manually modifying preprocess outputs before confound

  CoBrALab/RABIES#471 · Filter by author mapepe18 opened on Jan 21, 2026
  5

• Convert container, package, and installation instructions to use UV

  CoBrALab/RABIES#470 · Filter by author gdevenyi opened on Jan 21, 2026
  

• Update all docker container references to github cobralab container

  CoBrALab/RABIES#468 · Filter by author gdevenyi opened on Jan 14, 2026
  

• SIGMA Rat Brain Template and Atlas Substitution

  CoBrALab/RABIES#467 · Filter by author hookeba opened on Jan 14, 2026
  6

• Change to antsRegistration_affine_SyN.sh

  CoBrALab/RABIES#457 · Filter by author Gab-D-G opened on Oct 29, 2025
  1

• Bugs with version 0.5.4

  CoBrALab/RABIES#454 · Filter by author Gab-D-G opened on Oct 28, 2025
  1

• Attempting to process mouse brain functional ultrasound data with RABIES fails if more than one subject

  CoBrALab/RABIES#446 · Filter by author benhibou opened on Oct 13, 2025
  3

• Template orientation issue

  CoBrALab/RABIES#441 · Filter by author kjamison opened on Sep 16, 2025
  5

  

• Bold inhomogeneity correction

  CoBrALab/RABIES#437 · Filter by author JonasVejmelka opened on Aug 14, 2025
  5

• Image misalignment and failure in spatial inhomogeneity correction

  CoBrALab/RABIES#431 · Filter by author ParsaNilchian opened on Jul 8, 2025
  6

• Group ICA fails with "No convergence — giving up" message

  CoBrALab/RABIES#422 · Filter by author mhanafyuwo opened on May 15, 2025
  3

• Properly handle paths as Pathlib everywhere in code (was: PATH errors on bare-metal windows)

  CoBrALab/RABIES#418 · Filter by author schmidt12335 opened on Apr 29, 2025
  6

  

• Applying smoothing in confound only in specific axis

  CoBrALab/RABIES#409 · Filter by author mapepe18 opened on Mar 20, 2025
  4

• Adjust any plotting with thresholds to the "transparent thresholding" standard.

  CoBrALab/RABIES#405 · Filter by author gdevenyi opened on Feb 14, 2025

• Expanding on the /script/error_check_rabies.py script to compare values of outputs

  CoBrALab/RABIES#401 · Filter by author CMonnin opened on Jan 22, 2025
  1

  

• Minimize operations after commonspace resampling

  CoBrALab/RABIES#395 · Filter by author Gab-D-G opened on Nov 4, 2024

• Resampling of 4D data with ANTs alone

  CoBrALab/RABIES#388 · Filter by author Gab-D-G opened on Oct 5, 2024

• Explore orthogonalizing nuisance regressors with respect to noise ICs from ICA-AROMA

  CoBrALab/RABIES#386 · Filter by author danyluik opened on Sep 26, 2024

• Apply STC prior to de-oblique

  CoBrALab/RABIES#385 · Filter by author Gab-D-G opened on Sep 19, 2024

• An error occurred while using RABIES preprocessing: subprocess.CalledProcessError

  CoBrALab/RABIES#381 · Filter by author JianhuiFeng06 opened on Aug 27, 2024
  1

• Failure to Inherit Unbiased Template

  CoBrALab/RABIES#376 · Filter by author JS650 opened on Jun 24, 2024