siapy-cli/pyproject.toml at main · siapy/siapy-cli · GitHub

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[project]
name = "cli"
version = "0.1.0"
description = "Effortlessly segment spectral images using the siapy package."
authors = [{ name = "janezlapajne", email = "janez.lapajne@kis.si" }]
dependencies = [
    "siapy>=0.4.0",
    "loguru>=0.7.2",
    "pydantic-settings>=2.4.0",
    "typer>=0.12.3",
    "xgboost>=2.1.1",
    "tabulate>=0.9.0",
    "shap>=0.46.0",
    "umap-learn>=0.5.7",
]
requires-python = "==3.10.*"
readme = "README.md"
license = { text = "MIT" }

[project.scripts]
siapy-cli = "source.main:app"

[build-system]
requires = ["pdm-backend"]
build-backend = "pdm.backend"

[tool.mypy]
mypy_path = "stubs"
packages = ["source"]
explicit_package_bases = true

[[tool.mypy.overrides]]
module = "spectral"
ignore_missing_imports = true

[[tool.mypy.overrides]]
module = "sklearn.*"
ignore_missing_imports = true

[[tool.mypy.overrides]]
module = "scipy.*"
ignore_missing_imports = true

[[tool.mypy.overrides]]
module = "shap"
ignore_missing_imports = true

[[tool.mypy.overrides]]
module = "umap"
ignore_missing_imports = true

[tool.ruff]
extend-exclude = []
exclude = []
lint.ignore = ["F811"]
src = ["source/"]

[tool.codespell]
ignore-words-list = "janezlapajne"
skip = 'dist/*, docs, LICENCE, *.lock, *.toml, *.cff'
count = true
check-hidden = false

[tool.flake8]
max-line-length = 120

[tool.pdm]
distribution = true

[tool.pdm.build]
source-includes = ["source/"]

[tool.pdm.scripts]
siapy-cli.cmd = "source/main.py"
siapy-cli.env_file.override = ".env"

[tool.pdm.dev-dependencies]
lint = ["ruff>=0.4.8", "mypy>=1.10.1", "pandas-stubs>=2.2.2.240603"]


[dependency-groups]
dev = [
    "pre-commit>=3.7.1",
    "tomli>=2.0.1",
    "codespell>=2.3.0",
    "types-tabulate>=0.9.0.20241207",
]