config.csv

tissue,disco_path,alternate_ref_id,source,datasets_to_remove,cells_to_sketch
heart,"/brahms/mollag/meta_analysis/get_data/disco/disco_heart_v01_spca.rds","","disco","nature_cardio,nature,65badd7a-9262-4fd1-9ce2-eb5dc0ca8039","list('data.disco' = 30000, 'data.czi' = 40000, 'data.azimuth' = 20000, 'data.gtex' = 20000, 'data.hubmap' = 10000)"
lung,"/brahms/mollag/meta_analysis/get_data/disco/disco_lung_v2.0_spca.rds","","disco","1e6a6ef9-7ec9-4c90-bbfb-2ad3c3165fd1,01209dce-3575-4bed-b1df-129f57fbc031,9968be68-ab65-4a38-9e1a-c9b6abece194","list('data.gtex' = 10000, 'data.hubmap' = 30000, 'data.czi' = 50000, 'data.disco' = 30000)"
adrenal gland,"/brahms/mollag/meta_analysis/get_data/disco/disco_adrenal_gland_v01_spca.rds","","disco","","list('data.czi' = 60000, 'data.disco' = 60000)"
bladder,"/brahms/mollag/meta_analysis/get_data/disco/disco_bladder_v1.1_spca.rds","","disco","","list('data.czi' = 40000, 'data.hubmap' = 40000, 'data.disco' = 40000)"
blood,"/brahms/mollag/meta_analysis/get_data/disco/disco_blood_v1.1_spca.rds","","disco","de2c780c-1747-40bd-9ccf-9588ec186cee,59b69042-47c2-47fd-ad03-d21beb99818f","list('data.czi' = 60000, 'data.disco' = 60000)"
bone marrow,"/brahms/lis/pan-human/source/disco_bone_marrow_v2.0_remapped_spca.rds","","disco","","list('data.azimuth' = 40000, 'data.czi' = 40000, 'data.disco' = 40000)"
brain,"/brahms/mollag/meta_analysis/get_data/disco/disco_brain_v01_spca.rds","","disco","","list('data.czi' = 60000, 'data.disco' = 60000)"
breast,"/brahms/mollag/meta_analysis/get_data/disco/disco_breast_v2.1_spca.rds","","disco","de985818-285f-4f59-9dbd-d74968fddba3", "list('data.czi'= 50000, 'data.gtex' = 9770,'data.disco' = 50000)"
eye,"/brahms/mollag/meta_analysis/get_data/disco/disco_eye_v01_spca.rds","","disco","","list('data.czi' = 60000, 'data.disco' = 60000)"
gingiva,"/brahms/mollag/meta_analysis/get_data/disco/disco_gingiva_v01_spca.rds","","disco","",""
gut,"/brahms/mollag/meta_analysis/get_data/disco/disco_gut_v01_spca.rds","","disco","8e47ed12-c658-4252-b126-381df8d52a3d,9968be68-ab65-4a38-9e1a-c9b6abece194,9d5df009-eb76-43a3-b6cd-22017cc53700,36c867a7-be10-4e69-9b39-5de12b0af6da,b46237d1-19c6-4af2-9335-9854634bad16,2872f4b0-b171-46e2-abc6-befcf6de6306","list('data.czi' = 40000, 'data.hubmap' = 40000, 'data.disco' = 60000)"
kidney,"/brahms/mollag/meta_analysis/get_data/disco/disco_kidney_v01_spca.rds","","disco","","list('data.czi'=40000,'data.hubmap'=40000, 'data.disco' = 40000)"
liver,"/brahms/mollag/meta_analysis/get_data/disco/disco_liver_v2.0_spca.rds","","disco","macparland_v1,Ramachandran_healthy","list('data.azimuth' = 30000, 'data.czi' = 40000, 'data.hubmap' = 5279, 'data.disco' = 40000)"
ovary,"/brahms/mollag/meta_analysis/get_data/disco/disco_ovary_v01_spca.rds","","disco","","list('data.czi' = 60000, 'data.disco' = 60000)"
pancreas,"/brahms/mollag/meta_analysis/get_data/disco/disco_pancreas_v01_spca.rds","","disco","37b21763-7f0f-41ae-9001-60bad6e2841d","list('data.azimuth'=35289,'data.czi'=40000, 'data.disco'=40000)"
placenta,"/brahms/mollag/meta_analysis/get_data/disco/disco_placenta_v01_spca.rds","","disco","5bc42b88-bb76-4954-927b-8bb7369adc64","list('data.czi'=39120, 'data.disco'=39120)"
skeletalmuscle,"/brahms/mollag/meta_analysis/get_data/disco/disco_skeletal_muscle_v1.0_spca.rds","","disco","","list('data.czi'=30000, 'data.gtex'=3000, 'data.hubmap' = 30000, 'data.disco'=30000)"
skin,"/brahms/mollag/meta_analysis/get_data/disco/disco_skin_v01_spca.rds","","disco","124744b8-4681-474a-9894-683896122708","list('data.czi'=50000, 'data.gtex'=5327, 'data.disco'=50000)"
stomach,"/brahms/mollag/meta_analysis/get_data/disco/disco_stomach_v1.0_spca.rds","","disco","7bb64315-9e5a-41b9-9235-59acf9642a3e","list('data.czi'=60000, 'data.disco'=31087)"
testis,"/brahms/mollag/meta_analysis/get_data/disco/disco_testis_v01_spca.rds","","disco","","list('data.czi'=43032,'data.disco'=43032)"
thymus,"/brahms/mollag/meta_analysis/get_data/disco/disco_thymus_v01_spca.rds","","disco","cda2c8cd-be1c-42e5-b2cd-162caa1c4ce7","list('data.czi'=60000,'data.disco'=60000)"
endocrine gland,"/brahms/mollag/meta_analysis/get_data/disco/disco_thymus_v01.rds","","disco","","list('data.czi'=60000,'data.disco'=60000)"

adipose,"/brahms/mollag/meta_analysis/get_data/disco/disco_adipose_v01_spca.rds","azimuth_adipose","azimuth","","list('data.azimuth' = 40000, 'data.czi' = 40000, 'data.disco' = 40000)"
lymph node,"","1b9d8702-5af8-4142-85ed-020eb06ec4f6","czi","","list('data.azimuth' = 30000, 'data.czi.ref' = 30000, 'data.czi.ref' = 30000, 'data.hubmap' = 30000)"
spleen,"","1b9d8702-5af8-4142-85ed-020eb06ec4f6","czi","","list('data.azimuth' = 30000, 'data.czi' = 30000,'data.czi.ref' = 30000, 'data.hubmap' = 30000)"
brain_cortex,"/brahms/mollag/meta_analysis/get_data/disco/disco_brain_v01_spca.rds","","disco","","list('data.disco' = 30000, 'data.czi' = 60000)"