Add gor test-server option#123
Open
bragnarsson wants to merge 4 commits into
Open
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
When running multiple gor queries in sequence, e.g. 30 queries that each complete in a second, the startup time of gorpipe starts to be significant. This PR adds a gor test-server subcommand that runs gorpipe as a server, e.g.
gor test-server --port 9000 --cachedir=tmp3 --config=config/gor_config.txt
GOR test server listening on port 9000
curl -X POST http://localhost:9000/query -d "gorrow chr1,50000|calc x refbases(chrom,pos,pos+10)"
chrom pos x
chr1 50000 TAAACAGGTTA
In one actual example a pytest completes in 9 seconds with gor test-server but takes 59 seconds when starting gorpipe for each query.
NOTE: this was done by claude ai with a bit of guidance and feedback from testing.