Skip to content

Commit 467dd2f

Browse files
committed
cleanup readme, https
1 parent 0906566 commit 467dd2f

1 file changed

Lines changed: 6 additions & 12 deletions

File tree

‎README.md‎

Lines changed: 6 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -10,7 +10,7 @@
1010

1111
deepTools addresses the challenge of handling the large amounts of data that are now routinely generated from DNA sequencing centers. deepTools contains useful modules to process the mapped reads data for multiple quality checks, creating **normalized coverage files** in standard bedGraph and bigWig file formats, that allow comparison between different files (for example, treatment and control). Finally, using such normalized and standardized files, deepTools can create many publication-ready **visualizations** to identify enrichments and for functional annotations of the genome.
1212

13-
For support or questions please post to [Biostars](http://biostars.org). For bug reports and feature requests please open an issue [on github](http://github.com/deeptools/deeptools).
13+
For bug reports and feature requests please open an issue [on github](https://github.com/deeptools/deeptools).
1414

1515

1616
### Citation:
@@ -19,12 +19,10 @@ Ramírez F, Ryan DP, Grüning B, Bhardwaj V, Kilpert F, Richter AS, Heyne S, Dü
1919

2020
### Documentation:
2121

22-
Our [documentation](http://deeptools.readthedocs.org/) contains more details on the [individual tool scopes and usages](http://deeptools.readthedocs.org/en/latest/content/list_of_tools.html) and an [introduction to our deepTools Galaxy web server](http://deeptools.readthedocs.org/en/latest/content/help_galaxy_intro.html) including [step-by-step protocols](http://deeptools.readthedocs.org/en/latest/content/example_usage.html).
22+
Our [documentation](https://deeptools.readthedocs.org/) contains more details on the [individual tool scopes and usages](https://deeptools.readthedocs.org/en/latest/content/list_of_tools.html) and an [introduction to our deepTools Galaxy web server](https://deeptools.readthedocs.org/en/latest/content/help_galaxy_intro.html) including [step-by-step protocols](https://deeptools.readthedocs.org/en/latest/content/example_usage.html).
2323

24-
>Please see also the [FAQ](http://deeptools.readthedocs.org/en/latest/content/help_faq.html), which we update regularly.
25-
Our [Gallery](http://deeptools.readthedocs.org/en/latest/content/example_gallery.html) may give you some more ideas about the scope of deepTools.
26-
27-
>For more specific **troubleshooting, feedback, and tool suggestions**, please post [to Biostars](http://biostars.org).
24+
>Please see also the [FAQ](https://deeptools.readthedocs.org/en/latest/content/help_faq.html), which we update regularly.
25+
Our [Gallery](https://deeptools.readthedocs.org/en/latest/content/example_gallery.html) may give you some more ideas about the scope of deepTools.
2826

2927

3028
-------------------------------------------------------------------------------------------------------------------
@@ -57,12 +55,8 @@ In Brief:
5755
<a name="galaxy"/></a>
5856
### Galaxy Installation
5957

60-
deepTools can be easily integrated into [Galaxy](http://galaxyproject.org). Please see the [installation instructions in our documentation](http://deeptools.readthedocs.io/en/latest/content/installation.html#galaxy-installation) for further details.
61-
62-
**Note:** From version 2.3 onwards, deepTools support **python3**.
58+
deepTools can be easily integrated into [Galaxy](https://galaxyproject.org). Please see the [installation instructions in our documentation](https://deeptools.readthedocs.io/en/latest/content/installation.html#galaxy-installation) for further details.
6359

6460
------------------------------------
6561

66-
This tool suite is developed by the [Bioinformatics Facility](http://www1.ie-freiburg.mpg.de/bioinformaticsfac) at the [Max Planck Institute for Immunobiology and Epigenetics, Freiburg](http://www1.ie-freiburg.mpg.de/).
67-
68-
[Documentation](http://deeptools.readthedocs.org/en/latest/index.html) | [deepTools Galaxy](http://deeptools.ie-freiburg.mpg.de) | [FAQ](http://deeptools.readthedocs.org/en/latest/content/help_faq.html)
62+
[Documentation](https://deeptools.readthedocs.org/en/latest/index.html) | [FAQ](https://deeptools.readthedocs.org/en/latest/content/help_faq.html)

0 commit comments

Comments
 (0)