From b4674a69b3e28decbd897d77e69a3caa1a870f37 Mon Sep 17 00:00:00 2001 From: Daniel Standage Date: Mon, 1 Jun 2026 13:34:21 -0400 Subject: [PATCH 1/2] Troubleshoot CI --- .github/workflows/cibuild.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/.github/workflows/cibuild.yml b/.github/workflows/cibuild.yml index 6d56710..5c9a124 100644 --- a/.github/workflows/cibuild.yml +++ b/.github/workflows/cibuild.yml @@ -37,7 +37,6 @@ jobs: popd - name: Install run: | - python -m pip install --upgrade pip pip install . - name: Style check run: | From 6bf90c0e2490fa496370d2f1966774399ae58a25 Mon Sep 17 00:00:00 2001 From: Daniel Standage Date: Mon, 1 Jun 2026 14:31:43 -0400 Subject: [PATCH 2/2] cron updates --- pytaxonkit.py | 8 ++++---- sweetleaf.json | 2 ++ 2 files changed, 6 insertions(+), 4 deletions(-) diff --git a/pytaxonkit.py b/pytaxonkit.py index 957bcb9..fcfc638 100644 --- a/pytaxonkit.py +++ b/pytaxonkit.py @@ -206,7 +206,7 @@ def list(ids, raw=False, threads=None, data_dir=None, debug=False): ... print(f'Top level result: {taxon.name} ({taxon.taxid}); {len(subtaxa)} related taxa') ... Top level result: Polistes comanchus (268197); 2 related taxa - Top level result: Bos (9903); 33 related taxa + Top level result: Bos (9903); 34 related taxa >>> subtaxa[0] BasicTaxon(taxid=9904, rank='species', name='Bos gaurus') >>> pytaxonkit.list([9605], raw=True) @@ -1222,10 +1222,10 @@ def test_lca_keep_invalid_multi(): @pytest.mark.parametrize( - "domulti, ids,result", + "domulti, ids, result", [ - (False, [775536, 2238728, 1121123211234321], None), - (True, [[1766280, 406491, 2568889], [11111111111, 20487, 760325]], [None, None]), + (False, [775536, 2238728, 3602992145], None), + (True, [[3198828, 406491, 2222222222], [1111111111, 20487, 3674241]], [None, None]), ], ) def test_lca_all_missing(ids, domulti, result): diff --git a/sweetleaf.json b/sweetleaf.json index e26f5c9..806a00a 100644 --- a/sweetleaf.json +++ b/sweetleaf.json @@ -183,6 +183,7 @@ "1340892 [species] Symplocos xylopyrena": {}, "1382184 [species] Symplocos ampulliformis": {}, "1489813 [species] Symplocos acuminata": {}, + "1538024 [species] Symplocos munda": {}, "1603839 [species] Symplocos crassifolia": {}, "1603840 [species] Symplocos urceolaris": {}, "1609893 [species] Symplocos adinandrifolia": { @@ -194,6 +195,7 @@ "1619550 [species] Symplocos harroldii": {}, "1619551 [species] Symplocos stawellii": {}, "1679332 [species] Symplocos yunnanensis": {}, + "1789566 [species] Symplocos obtusa": {}, "1827319 [species] Symplocos crassipes": {}, "1842783 [species] Symplocos thwaitesii": {}, "2072302 [species] Symplocos estrellensis": {},