vsnp_path_adder.py: Add reference option
vsnp_fasta_gbk_gff_by_acc.py: Use NCBI accession to download FASTA, GFF and GBK files
vsnp_excel_merge_files.py: Merge multiple Excel vSNP_step1.py stat summary files to a single file
vsnp_fastq_quality.py: Get FASTQ stats
vsnp_merge_vcf_into_fasta.py: Merge VCF calls to FASTA for a reference guided assembly
vsnp_fasta_to_snps_table.py: Make a cascading table and corresponding tree from an aligned FASTA
vsnp_spoligotype.py: Get Mycobacterium TB complex spoligotype
vsnp_bruc_mlst.py: Get Brucella MLST