NeuXelec/pyproject.toml at main · HumanNeuronLab/NeuXelec · GitHub

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[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "neuxelec"
version = "1.2.1"
description = "SEEG electrode reconstruction and 3D neuroimaging visualization"
readme = "README.md"
requires-python = ">=3.10"
license = { text = "GPL-3.0-or-later" }
authors = [{ name = "Jules Veber", email = "contact@neuxelec.com" }]
keywords = ["SEEG", "neuroimaging", "electrode", "coregistration", "epilepsy", "MNI", "visualization"]

# Runtime dependencies are pinned in requirements.txt for reproducible
# scientific results. The loose lower bounds here document minimum versions.
dependencies = [
    "PySide6>=6.6",
    "numpy>=1.24",
    "nibabel>=5.2",
    "SimpleITK>=2.3",
    "pyvista>=0.44",
    "pyvistaqt>=0.11",
    "vtk>=9.2",
    "scikit-image>=0.22",
    "scipy>=1.11",
    "matplotlib>=3.8",
    "openpyxl>=3.1",
    "imageio>=2.31",
]

[project.urls]
Homepage = "https://neuxelec.com"

[project.optional-dependencies]
dev = ["pytest>=8.0", "pytest-cov>=5.0", "ruff>=0.6", "black>=24.0", "mypy>=1.11"]

[project.scripts]
neuxelec = "neuxelec.app:main"

[tool.setuptools]
package-dir = { "" = "src" }

[tool.setuptools.packages.find]
where = ["src"]

# ---------------------------------------------------------------------------
# Ruff - fast linter
# ---------------------------------------------------------------------------
[tool.ruff]
line-length = 100
target-version = "py310"
src = ["src", "tests"]

[tool.ruff.lint]
# A pragmatic rule set: correctness and obvious smells, without fighting the
# existing style. Tighten over time as the codebase is cleaned up.
select = ["E", "F", "W", "I", "UP", "B", "C4"]
ignore = [
    "E501",   # line length handled by black/line-length, not enforced hard
    "B008",   # function calls in argument defaults (common in Qt code)
]

[tool.ruff.lint.per-file-ignores]
"__init__.py" = ["F401"]   # re-exports

# ---------------------------------------------------------------------------
# Black - formatter
# ---------------------------------------------------------------------------
[tool.black]
line-length = 100
target-version = ["py310"]

# ---------------------------------------------------------------------------
# mypy - static type checking (lenient to start, tighten incrementally)
# ---------------------------------------------------------------------------
[tool.mypy]
python_version = "3.10"
ignore_missing_imports = true
warn_unused_ignores = true
warn_redundant_casts = true
no_implicit_optional = true
files = ["src/neuxelec"]

# ---------------------------------------------------------------------------
# pytest
# ---------------------------------------------------------------------------
[tool.pytest.ini_options]
minversion = "8.0"
testpaths = ["tests"]
addopts = "-ra -q"
pythonpath = ["src"]